Microarray Analysis Software
category name: Microarray Analysis Software
item: GeneSpring GX
vendor: Agilent Technologies
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description:
GeneSpring GX is widely regarded as the gold standard for
expression data analysis. Designed to meet the needs of the
individual researcher, GeneSpring GX seamlessly interfaces with
GeneSpring Workgroup to provide a highly scalable platform for
enterprise- level genomic research.
System Requirements Windows?
Operating system (OS): Windows 2000/XP
Memory: 512 MB RAM
Free disk space/storage: 250 MB
System Requirements Windows?
Operating system (OS): Mac OS X v10.4.2 or later
Memory: 512 MB RAM
Free disk space/storage: 250 MBcategory name: Microarray Analysis
Software
item: GeneSpring Workgroup
vendor: Agilent Technologies
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description:
Agilent¡¯s GeneSpring GX Workgroup software is a highly scalable
analysis platform for managing and mining expression data in a
workgroup or an enterprise setting, and is deployed in over 40
leading pharmaceutical, biotechnology, academic and government
research organizations worldwide. GeneSpring GX Workgroup
streamlines microarray research at large and multicampus
organizations, and provides facilities for robust data analysis,
collaborative workflow management, automating research procedures,
and secure data administration. GeneSpring GX Workgroup can reduce
the cost of bringing drugs to market by providing better predictive
toxicology assessments and more thorough analysis techniques for
biomarker discovery.category name: Microarray Analysis Software
item: Rosetta Luminator Gene Expression Data Analysis System
vendor: Agilent Technologies
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Providing the best bioinformatics tools for gene expression
analysis! the Rosetta Luminator System is a powerful yet
cost-efficient enterprise gene expression data analysis solution.
Its robust storage, retrieval and analysis functions can handle up
to 500 profiles, making it the ideal system for small to mid-sized
research organizations.
Features
Multi-format Capability. Single- and dual-channel data are accepted
from a variety of customized and commercial microarray formats,
such as Affymetrix Probe Arrays and Agilent DNA Microarrays.
Flexible Database. A Central database provides for storing gene
expression data and annotation. The database uses Oracle technology
and a flexible data storage schema developed by Rosetta
Biosoftware.
Powerful Statistics. Technology-specific error models are leveraged
to assign P-values and error bars to every single gene expression
data point. Rich Visualization Tools. The Rosetta Luminator System
includes a number of useful and versatile visualization tools:
Plot Viewers visualize and compare single- and dual-channel data
sets graphically with easy-to-use Intensity, Compare, Histogram,
and Ratio Plot Viewers.
able Viewer displays gene expression profiling data in a
customizable spreadsheet for export, analysis and reporting.
Image Viewer analyzes single- or dual-channel images representing
the primary data for a specific profiling technology, and
identifies artifacts to exclude from future analyses.
Analysis Features. The system conducts time-course and treatment
titration analyses by highlighting trends across multiple
experiments, and performs cluster analyses of both single- and
dual-channel experiments or profiles.
Analysis Tools ROAST, the Rosetta Array Search Tool, is capable of
conducting statistically weighted similarity searches on both the
gene and experiment levels.
Annotation Managers. Flexible annotation managers are capable of
recording important information associated with experimental
annotation.
BioSets.
Users are allowed to create BioSets ¡ª data collections to store
for future analyses, or to share with collaborators.
Catid: 29
